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peptidase M50B-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843026, updated on 18-Sep-2024

Summary

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Official Full Name
peptidase M50B-like protein
Primary source
TAIR:AT1G67060
Locus tag
AT1G67060
See related
Araport:AT1G67060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O19.19; F1O19_19
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (25036502..25039439)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene membrane-associated kinase regulator Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Mannose-6-phosphate isomerase, type I Neighboring gene abscisic acid (aba)-deficient 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334268.1
NM_105376.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
peptidase M50B-like protein
NP_176877.2
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25036502..25039439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334267.1 → NP_001321368.1  peptidase M50B-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1Q5, A0A1P8AQN6
    Conserved Domains (1) summary
    pfam13398
    Location:1 → 157
    Peptidase_M50B; Peptidase M50B-like

  2. NM_105376.4 → NP_176877.2  peptidase M50B-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176877.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ELP1, A0JQ16
    Conserved Domains (1) summary
    pfam13398
    Location:29 → 224
    Peptidase_M50B; Peptidase M50B-like

  3. NM_001334268.1 → NP_001321369.1  peptidase M50B-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1Q5, A0A1P8AQN6
    Conserved Domains (1) summary
    pfam13398
    Location:1 → 157
    Peptidase_M50B; Peptidase M50B-like
Nucleotide Protein
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