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AT1G59660 Nucleoporin autopeptidase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842256, updated on 7-Sep-2023

Summary

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Gene symbol
AT1G59660
Gene description
Nucleoporin autopeptidase
Primary source
Araport:AT1G59660
Locus tag
AT1G59660
See related
TAIR:AT1G59660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30E16.24; T30E16_24
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Genomic context

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See AT1G59660 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (21923986..21929437)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transcription factor BIG PETAL P (BPE) Neighboring gene CW14 protein (DUF1336) Neighboring gene glutathione S-transferase TAU 15 Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleoporin Nup98 participates in flowering regulation in a CONSTANS-independent mode. Jiang S, et al. Plant Cell Rep, 2019 Oct. PMID 31236659
  2. Nup98 FG domains from diverse species spontaneously phase-separate into particles with nuclear pore-like permselectivity. Schmidt HB, et al. Elife, 2015 Jan 6. PMID 25562883, Free PMC Article
  3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_104659.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
involved_in nucleocytoplasmic transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Nucleoporin autopeptidase
NP_176175.1
  • Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 64429 Blast hits to 28580 proteins in 1811 species: Archae - 118; Bacteria - 17184; Metazoa - 18465; Fungi - 12106; Plants - 2886; Viruses - 648; Other Eukaryotes - 13022 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21923986..21929437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333860.1 → NP_001320545.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AN64, A0A5S9WQZ0

  2. NM_001333861.1 → NP_001320546.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AN64, A0A5S9WQZ0

  3. NM_104659.3 → NP_176175.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176175.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4ID16, Q9LQ50
    UniProtKB/TrEMBL
    A0A5S9WQZ0
    Conserved Domains (2) summary
    pfam04096
    Location:846 → 986
    Nucleoporin2; Nucleoporin autopeptidase
    pfam13634
    Location:46 → 143
    Nucleoporin_FG; Nucleoporin FG repeat region
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4ID16.1

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