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GH3.4 Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842240, updated on 7-Sep-2023

Summary

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Gene symbol
GH3.4
Gene description
Auxin-responsive GH3 family protein
Primary source
Araport:AT1G59500
Locus tag
AT1G59500
See related
TAIR:AT1G59500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30E16.2; T30E16_2
Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.
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Genomic context

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See GH3.4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (21854493..21856614, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene B-block-binding subunit of TFIIIC protein Neighboring gene ncRNA Neighboring gene Carbohydrate-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Staswick PE, et al. Plant Cell, 2005 Feb. PMID 15659623, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables indole-3-acetic acid amido synthetase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular auxin homeostasis TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Auxin-responsive GH3 family protein
NP_176159.1
  • GH3.4; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1635 Blast hits to 1520 proteins in 238 species: Archae - 0; Bacteria - 543; Metazoa - 54; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21854493..21856614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104643.1 → NP_176159.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176159.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LQ68
    UniProtKB/TrEMBL
    A0A5S9WQL5
    Conserved Domains (2) summary
    PLN02249
    Location:1 → 597
    PLN02249; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:26 → 566
    GH3; GH3 auxin-responsive promoter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LQ68.1

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