U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

muscle M-line assembly protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841817, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
muscle M-line assembly protein
Primary source
TAIR:AT1G53800
Locus tag
AT1G53800
See related
Araport:AT1G53800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18A20.4; T18A20_4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (20081644..20084551)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory complex ATPase Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene F-box family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001036106.1
NM_001333611.1
NM_104257.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
muscle M-line assembly protein
NP_001031183.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564641.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20081644..20084551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333610.1 → NP_001322869.1  muscle M-line assembly protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJP4, B9DHC9
    Conserved Domains (1) summary
    pfam07460
    Location:113 → 141
    NUMOD3; NUMOD3 motif (2 copies)

  2. NM_104257.3 → NP_564641.2  muscle M-line assembly protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564641.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLB7, A0A5S9WLQ1, F4HTD0
    Conserved Domains (1) summary
    pfam07460
    Location:109 → 137
    NUMOD3; NUMOD3 motif (2 copies)

  3. NM_001036106.1 → NP_001031183.1  muscle M-line assembly protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031183.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJP4, B9DHC9
    Conserved Domains (1) summary
    pfam07460
    Location:113 → 141
    NUMOD3; NUMOD3 motif (2 copies)

  4. NM_001333611.1 → NP_001322870.1  muscle M-line assembly protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8L7Y2, Q945M0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools