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Coatomer, beta' subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841666, updated on 18-Sep-2024

Summary

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Official Full Name
Coatomer, beta' subunit
Primary source
TAIR:AT1G52360
Locus tag
AT1G52360
See related
Araport:AT1G52360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K6.16; F19K6_16
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (19499146..19506309)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Arg Neighboring gene Ribosomal protein L22p/L17e family protein Neighboring gene NUP50 (Nucleoporin 50 kDa) protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198274.2
NM_001333538.1
NM_001333539.1
NM_104114.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Coatomer, beta' subunit
NP_001185203.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
NP_175645.1
  • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3); Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64; Bacteria - 8410; Metazoa - 31451; Fungi - 17403; Plants - 9943; Viruses - 42; Other Eukaryotes - 10413 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19499146..19506309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104114.3 → NP_175645.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175645.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GX79, Q9C827
    UniProtKB/TrEMBL
    A0A5S9WL94, A0A654EJ89
    Conserved Domains (4) summary
    COG2319
    Location:24 → 474
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:17 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:320 → 764
    Coatomer_WDAD; Coatomer WD associated region
    sd00039
    Location:103 → 140
    7WD40; WD40 repeat [structural motif]

  2. NM_001333538.1 → NP_001322820.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV73, A0A5S9WL94, A0A654EJ89

  3. NM_001333539.1 → NP_001322821.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GX79, Q9C827
    UniProtKB/TrEMBL
    A0A5S9WL94, A0A654EJ89

  4. NM_001198274.2 → NP_001185203.1  Coatomer, beta' subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185203.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EJ89, F4ICX0
    Conserved Domains (4) summary
    COG2319
    Location:41 → 518
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:61 → 341
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:364 → 808
    Coatomer_WDAD; Coatomer WD associated region
    sd00039
    Location:147 → 184
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C827.1

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