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GH3.17 Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839706, updated on 18-Sep-2024

Summary

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Official Symbol
GH3.17
Official Full Name
Auxin-responsive GH3 family protein
Primary source
TAIR:AT1G28130
Locus tag
AT1G28130
See related
Araport:AT1G28130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3H9.21; F3H9_21
Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (9825169..9828118)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene serine carboxypeptidase-like 45 Neighboring gene ubiquitin thioesterase otubain-like protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis. Guo R, et al. Biochem Biophys Res Commun, 2022 Jan 22. PMID 34883285
  2. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Staswick PE, et al. Plant Cell, 2005 Feb. PMID 15659623, Free PMC Article
  3. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis.
    Title: Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102578.4
NM_179387.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables indole-3-acetic acid amido synthetase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular auxin homeostasis TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Auxin-responsive GH3 family protein
NP_174134.1
  • GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
NP_849718.1
  • GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1092 Blast hits to 1087 proteins in 203 species: Archae - 0; Bacteria - 311; Metazoa - 52; Fungi - 2; Plants - 653; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9825169..9828118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102578.4 → NP_174134.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174134.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ87
    UniProtKB/TrEMBL
    A0A178WH43, A0A5S9W5S6
    Conserved Domains (1) summary
    PLN02247
    Location:1 → 609
    PLN02247; indole-3-acetic acid-amido synthetase

  2. NM_179387.2 → NP_849718.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849718.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ87
    Conserved Domains (2) summary
    cl21606
    Location:1 → 466
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:1 → 436
    GH3; GH3 auxin-responsive promoter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZ87.1

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