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RBL6 RHOMBOID-like protein 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837831, updated on 15-Feb-2024

Summary

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Gene symbol
RBL6
Gene description
RHOMBOID-like protein 6
Primary source
Araport:AT1G12750
Locus tag
AT1G12750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBL6; RHOMBOID-like protein 6; T12C24.28; T12C24_28
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (4344943..4348390, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytochrome P450, family 87, subfamily A, polypeptide 2 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198046.2
NM_001332047.1
NM_001332048.1
NM_001332049.1
NM_001332050.1
NM_001332051.1
NM_101145.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RHOMBOID-like protein 6
NP_001184975.1
  • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1).
NP_001318990.1
  • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
NP_172735.1
  • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4344943..4348390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101145.3 → NP_172735.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172735.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ48, Q9LN72
    UniProtKB/TrEMBL
    A0A178WC22
    Conserved Domains (1) summary
    pfam01694
    Location:92 → 232
    Rhomboid; Rhomboid family

  2. NM_001198046.2 → NP_001184975.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184975.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ48, Q9LN72
    UniProtKB/TrEMBL
    A0A178WC22
    Conserved Domains (1) summary
    pfam01694
    Location:92 → 232
    Rhomboid; Rhomboid family

  3. NM_001332048.1 → NP_001322586.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ48, Q9LN72
    UniProtKB/TrEMBL
    A0A178WC22

  4. NM_001332047.1 → NP_001318990.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZEB4

  5. NM_001332049.1 → NP_001322585.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUJ6

  6. NM_001332050.1 → NP_001322584.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ48, Q9LN72
    UniProtKB/TrEMBL
    A0A178WC22

  7. NM_001332051.1 → NP_001322583.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ48, Q9LN72
    UniProtKB/TrEMBL
    A0A178WC22
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZ48.1

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