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AT5G52490 Fibrillarin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835325, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G52490
Gene description
Fibrillarin family protein
Primary source
Araport:AT5G52490
Locus tag
AT5G52490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K24M7.24; K24M7_24
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (21298857..21300239)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene fibrillarin 1 Neighboring gene ncRNA Neighboring gene RNI-like superfamily protein Neighboring gene tRNA-Leu Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Fibrillarin family protein
NP_568773.1
  • Fibrillarin family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: tRNA processing, rRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21298857..21300239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124628.1 → NP_568773.1  Fibrillarin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568773.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FHB3
    UniProtKB/TrEMBL
    A0A654GAK4
    Conserved Domains (1) summary
    pfam01269
    Location:61 → 289
    Fibrillarin; Fibrillarin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FHB3.1

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