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AT5G45190 Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834555, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G45190
Gene description
Cyclin family protein
Primary source
Araport:AT5G45190
Locus tag
AT5G45190
See related
TAIR:AT5G45190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CYCT1;5; K18C1.7; K18C1_7
Summary
Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).
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Genomic context

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See AT5G45190 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (18277080..18281909, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Root hair defective 3 GTP-binding protein (RHD3) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Cui X, et al. Plant Cell, 2007 Apr. PMID 17468259, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161291.1
NM_001344595.1
NM_123887.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of viral process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to virus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within trichome morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclin family protein
NP_001154763.1
  • Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4079 Blast hits to 3698 proteins in 345 species: Archae - 2; Bacteria - 149; Metazoa - 1860; Fungi - 545; Plants - 474; Viruses - 8; Other Eukaryotes - 1041 (source: NCBI BLink).
NP_199332.2
  • Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4751 Blast hits to 4271 proteins in 366 species: Archae - 7; Bacteria - 169; Metazoa - 2069; Fungi - 662; Plants - 531; Viruses - 15; Other Eukaryotes - 1298 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18277080..18281909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123887.4 → NP_199332.2  Cyclin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199332.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKE6
    UniProtKB/TrEMBL
    A0A178UHI3, A0A654G819
    Conserved Domains (3) summary
    cd20587
    Location:49 → 172
    CYCLIN_AcCycT_rpt1; first cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
    cd20588
    Location:176 → 268
    CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
    cl11081
    Location:273 → 341
    dermokine

  2. NM_001344595.1 → NP_001329973.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9D0, A0A5S9YB55

  3. NM_001161291.1 → NP_001154763.1  Cyclin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154763.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHI3, F4KD43
    Conserved Domains (2) summary
    smart00385
    Location:193 → 279
    CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
    pfam00134
    Location:33 → 185
    Cyclin_N; Cyclin, N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKE6.2

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