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AT5G42560 Abscisic acid-responsive (TB2/DP1, HVA22) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834262, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G42560
Gene description
Abscisic acid-responsive (TB2/DP1, HVA22) family protein
Primary source
Araport:AT5G42560
Locus tag
AT5G42560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K16E1.3; K16E1_3
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Genomic context

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See AT5G42560 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (17014847..17017252)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene exoribonuclease 2 Neighboring gene inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784) Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085223.1
NM_001125889.1
NM_123620.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Abscisic acid-responsive (TB2/DP1, HVA22) family protein
NP_001078692.1
  • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 2054 Blast hits to 2008 proteins in 266 species: Archae - 0; Bacteria - 108; Metazoa - 929; Fungi - 303; Plants - 514; Viruses - 6; Other Eukaryotes - 194 (source: NCBI BLink).
NP_001119361.1
  • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_568606.1
  • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17014847..17017252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123620.4 → NP_568606.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568606.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LE10, Q9FH69
    UniProtKB/TrEMBL
    A0A178UH03, A0A654G8B6, Q1LYX3
    Conserved Domains (1) summary
    pfam03134
    Location:19 → 97
    TB2_DP1_HVA22; TB2/DP1, HVA22 family

  2. NM_001125889.1 → NP_001119361.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119361.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UH03, A8MRL9
    Conserved Domains (1) summary
    pfam03134
    Location:1 → 85
    TB2_DP1_HVA22; TB2/DP1, HVA22 family

  3. NM_001085223.1 → NP_001078692.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078692.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UH03, A8MRL9
    Conserved Domains (1) summary
    pfam03134
    Location:1 → 85
    TB2_DP1_HVA22; TB2/DP1, HVA22 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LE10.2

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