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RD22 BURP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832636, updated on 7-Sep-2023

Summary

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Gene symbol
RD22
Gene description
BURP domain-containing protein
Primary source
Araport:AT5G25610
Locus tag
AT5G25610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRD22; RESPONSIVE TO DESSICATION 22; T14C9.150; T14C9_150
Summary
responsive to dehydration 22 (RD22) mediated by ABA
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (8914122..8916856, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA ligase (DUF630 and DUF632) Neighboring gene putative nucleic-acid protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana. Yamaguchi-Shinozaki K, et al. Mol Gen Genet, 1993 Apr. PMID 8479424
  2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122472.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables nutrient reservoir activity TAS
Traceable Author Statement
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to abscisic acid IEP
Inferred from Expression Pattern
more info
  
acts_upstream_of_or_within response to desiccation IEP
Inferred from Expression Pattern
more info
  
acts_upstream_of_or_within response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endosome HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
BURP domain-containing protein
NP_197943.1
  • RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8914122..8916856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122472.4 → NP_197943.1  BURP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197943.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q08298, Q56WL9
    UniProtKB/TrEMBL
    A0A5S9Y765, A0A654G424
    Conserved Domains (1) summary
    cl03923
    Location:174 → 392
    BURP; BURP domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
1913421A.1
Q08298.1

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