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DGR2 transmembrane protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832620, updated on 18-Sep-2024

Summary

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Official Symbol
DGR2
Official Full Name
transmembrane protein, putative (Protein of unknown function, DUF642)
Primary source
TAIR:AT5G25460
Locus tag
AT5G25460
See related
Araport:AT5G25460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DUF642 L-GalL responsive gene 2; F18G18.200; F18G18_200
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (8863224..8865677)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cytochrome bd ubiquinol oxidase, 14kDa subunit Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene DNA methyltransferase-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of two L-Galactono-1,4-lactone-responsive genes with complementary expression during the development of Arabidopsis thaliana. Gao Y, et al. Plant Cell Physiol, 2012 Mar. PMID 22323769
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  4. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. It is postulated that the DGR proteins act in the synthesis or assembly of the cell wall, influence the cell wall's extension and consequently influence cell growth. [DGR2]
    Title: Analysis of two L-Galactono-1,4-lactone-responsive genes with complementary expression during the development of Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122456.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
transmembrane protein, putative (Protein of unknown function, DUF642)
NP_197928.1
  • Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8863224..8865677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122456.4 → NP_197928.1  transmembrane protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197928.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z328, Q56XA8, Q8LEX7, Q940Q9, Q94F20
    UniProtKB/TrEMBL
    A0A178UH27, A0A5S9Y7P0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94F20.1

Gene LinkOut

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