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Octicosapeptide/Phox/Bem1p family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831481, updated on 18-Sep-2024

Summary

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Official Full Name
Octicosapeptide/Phox/Bem1p family protein
Primary source
TAIR:AT5G16220
Locus tag
AT5G16220
See related
Araport:AT5G16220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21H19.140; T21H19_140
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (5298112..5300642, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose synthase like A11 Neighboring gene 50S ribosomal protein-like protein Neighboring gene HEAT repeat-containing protein Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein Neighboring gene ncRNA Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. QUIRKY interacts with STRUBBELIG and PAL OF QUIRKY to regulate cell growth anisotropy during Arabidopsis gynoecium development. Trehin C, et al. Development, 2013 Dec. PMID 24173806
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121627.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular organelle IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Octicosapeptide/Phox/Bem1p family protein
NP_197126.1
  • Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5298112..5300642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121627.4 → NP_197126.1  Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197126.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LF06
    UniProtKB/TrEMBL
    A0A178UHS8, A0A654G1P9
    Conserved Domains (2) summary
    cd06410
    Location:34 → 136
    PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
    PRK10263
    Location:261 → 470
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LF06.1

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