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CYC1BAT Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830502, updated on 18-Sep-2024

Summary

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Official Symbol
CYC1BAT
Official Full Name
Cyclin family protein
Primary source
TAIR:AT5G06150
Locus tag
AT5G06150
See related
Araport:AT5G06150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CYCB1;2; cyclin B 1;2; CYCLIN B1;2; MBL20.2; MBL20_2
Summary
Encodes a cyclin whose expression is reduced in response to high salt.
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (1859279..1861703, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ-like protein Neighboring gene sorting nexin 1 Neighboring gene splicing factor-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The anaphase-promoting complex initiates zygote division in Arabidopsis through degradation of cyclin B1. Guo L, et al. Plant J, 2016 Apr. PMID 26952278
  2. ATR and ATM play both distinct and additive roles in response to ionizing radiation. Culligan KM, et al. Plant J, 2006 Dec. PMID 17227549
  3. Arabidopsis anaphase-promoting complexes: multiple activators and wide range of substrates might keep APC perpetually busy. Fülöp K, et al. Cell Cycle, 2005 Aug. PMID 15970679
  4. Identification of kinase substrates by bimolecular complementation assays. Pusch S, et al. Plant J, 2012 Apr. PMID 22098373
  5. Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Boruc J, et al. Plant Physiol, 2010 Feb. PMID 20018602, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342857.1
NM_120697.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle phase transition IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to gamma radiation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclin family protein
NP_196233.1
  • CYC1BAT; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN B1;3 (TAIR:AT3G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1859279..1861703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120697.3 → NP_196233.1  Cyclin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196233.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39067, Q9FG02
    UniProtKB/TrEMBL
    A0A178UP02, A0A5S9Y1V0, A0A654FYZ1
    Conserved Domains (2) summary
    cd20511
    Location:312 → 428
    CYCLIN_AtCycB-like_rpt2; second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins
    cd20567
    Location:162 → 307
    CYCLIN_AtCycB-like_rpt1; first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins

  2. NM_001342857.1 → NP_001332193.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGB9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39067.2

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