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AT5G06120 ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830499, updated on 15-Oct-2023

Summary

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Gene symbol
AT5G06120
Gene description
ARM repeat superfamily protein
Primary source
Araport:AT5G06120
Locus tag
AT5G06120
See related
TAIR:AT5G06120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K16F4.8; K16F4_8
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Genomic context

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See AT5G06120 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
30
Sequence:
Chromosome: 5; NC_003076.8 (1843828..1853051)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase 7 Neighboring gene myb domain protein 33 Neighboring gene DnaJ and myb-like DNA-binding domain-containing protein Neighboring gene tRNA-Leu Neighboring gene chaperone protein dnaJ-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342851.1
NM_120694.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_001190235.1
  • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
NP_001190236.1
  • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
NP_001318488.1
  • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
NP_196230.2
  • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 572 Blast hits to 534 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1843828..1853051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342852.1 → NP_001330879.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BC50, Q9LHS4

  2. NM_001342853.1 → NP_001330881.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  3. NM_001203307.2 → NP_001190236.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190236.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  4. NM_001342854.1 → NP_001330880.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  5. NM_001342855.1 → NP_001330878.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  6. NM_001203306.2 → NP_001190235.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190235.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K2C2, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:34 → 98
    IBN_N; Importin-beta N-terminal domain

  7. NM_001342856.1 → NP_001330877.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  8. NM_001342850.1 → NP_001330882.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  9. NM_001342851.1 → NP_001318488.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
    Conserved Domains (1) summary
    smart00913
    Location:26 → 90
    IBN_N; Importin-beta N-terminal domain

  10. NM_120694.2 → NP_196230.2  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196230.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K2C1, Q9LHS4
    Conserved Domains (1) summary
    pfam03810
    Location:34 → 98
    IBN_N; Importin-beta N-terminal domain
Nucleotide Protein
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