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AT4G35410 Clathrin adaptor complex small chain family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829694, updated on 7-Sep-2023

Summary

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Gene symbol
AT4G35410
Gene description
Clathrin adaptor complex small chain family protein
Primary source
Araport:AT4G35410
Locus tag
AT4G35410
See related
TAIR:AT4G35410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23E12.30; F23E12_30
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Genomic context

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See AT4G35410 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (16832339..16834002)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AT-hook protein of GA feedback 1 Neighboring gene pseudo Neighboring gene dihydroflavonol 4-reductase-like1 Neighboring gene uncharacterized protein Neighboring gene chloride channel E Neighboring gene ankyrin repeat-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342350.1
NM_119707.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
  
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Clathrin adaptor complex small chain family protein
NP_001320142.1
  • Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: associated protein 19 (TAIR:AT2G17380.1); Has 1701 Blast hits to 1700 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 404; Plants - 247; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).
NP_195267.1
  • Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: associated protein 19 (TAIR:AT2G17380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16832339..16834002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119707.4 → NP_195267.1  Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195267.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23685
    UniProtKB/TrEMBL
    A0A5S9WYU2, A0A654F4E6
    Conserved Domains (1) summary
    cd14831
    Location:3 → 143
    AP1_sigma; AP-1 complex subunit sigma

  2. NM_001342350.1 → NP_001320142.1  Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5F3, F4JN08
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23685.1

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