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KLTH0D03806g KLTH0D03806p [ Lachancea thermotolerans CBS 6340 ]

Gene ID: 8295113, updated on 21-Dec-2023

Summary

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Gene symbol
KLTH0D03806g
Gene description
KLTH0D03806p
Locus tag
KLTH0D03806g
Gene type
protein coding
RNA name
KLTH0D03806p
RefSeq status
PROVISIONAL
Organism
Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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Genomic context

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See KLTH0D03806g in Genome Data Viewer
Location:
chromosome: D
Exon count:
1
Sequence:
Chromosome: D; NC_013080.1 (371457..372674, complement)

Chromosome D - NC_013080.1Genomic Context describing neighboring genes Neighboring gene KLTH0D03762p Neighboring gene KLTH0D03784p Neighboring gene KLTH0D03828p Neighboring gene tRNA-Val

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013080.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
KLTH0D03806p
XP_002552889.1
  • highly similar to uniprot|Q01939 Saccharomyces cerevisiae YGL048C RPT6 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates bound by ubiquitin-protein ligases Ubr1p and Ufd4p localized mainly to the nucleus throughout the cell cycle

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013080.1 Reference assembly

    Range
    371457..372674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002552843.1 → XP_002552889.1  KLTH0D03806p [Lachancea thermotolerans CBS 6340]

    See identical proteins and their annotated locations for XP_002552889.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5DGA9
    Conserved Domains (2) summary
    COG1222
    Location:6 → 403
    RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    pfam00004
    Location:184 → 317
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
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