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KLTH0F17336g KLTH0F17336p [ Lachancea thermotolerans CBS 6340 ]

Gene ID: 8293172, updated on 21-Dec-2023

Summary

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Gene symbol
KLTH0F17336g
Gene description
KLTH0F17336p
Locus tag
KLTH0F17336g
Gene type
protein coding
RNA name
KLTH0F17336p
RefSeq status
PROVISIONAL
Organism
Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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Genomic context

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See KLTH0F17336g in Genome Data Viewer
Location:
chromosome: F
Exon count:
1
Sequence:
Chromosome: F; NC_013082.1 (1404139..1405536, complement)

Chromosome F - NC_013082.1Genomic Context describing neighboring genes Neighboring gene KLTH0F17292p Neighboring gene KLTH0F17314p Neighboring gene KLTH0F17358p Neighboring gene KLTH0F17380p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013082.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
KLTH0F17336p
XP_002554938.1
  • similar to uniprot|O00021 Saccharomyces cerevisiae YOR056C NOB1 Nin1 (One) Binding protein essential nuclear protein involved in proteasome maturation and synthesis of 40S ribosome subunits required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013082.1 Reference assembly

    Range
    1404139..1405536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002554892.1 → XP_002554938.1  KLTH0F17336p [Lachancea thermotolerans CBS 6340]

    See identical proteins and their annotated locations for XP_002554938.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5DJL2
    Conserved Domains (3) summary
    cd09876
    Location:12 → 118
    PIN_Nob1; PIN domain of eukaryotic ribosome assembly factor Nob1 and archaeal UPF0129 protein Ta0041-like homologs
    pfam08772
    Location:299 → 373
    NOB1_Zn_bind; Nin one binding (NOB1) Zn-ribbon like
    cl14812
    Location:229 → 332
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
Nucleotide Protein
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