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AT4G22240 Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828319, updated on 7-Sep-2023

Summary

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Gene symbol
AT4G22240
Gene description
Plastid-lipid associated protein PAP / fibrillin family protein
Primary source
Araport:AT4G22240
Locus tag
AT4G22240
See related
TAIR:AT4G22240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FBN1b; fibrillin 1b; T10I14.70; T10I14_70
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Genomic context

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See AT4G22240 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (11765803..11767422, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene ncRNA Neighboring gene defensin-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene Alternative oxidase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions. Torres-Romero D, et al. J Exp Bot, 2022 Jan 27. PMID 34651644, Free PMC Article
  2. A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield. Sun F, et al. New Phytol, 2012 Apr. PMID 22269069
  3. Fibrillin2 in chloroplast plastoglobules participates in photoprotection and jasmonate-induced senescence. Kim I, et al. Plant Physiol, 2022 Jun 27. PMID 35404409, Free PMC Article
  4. Tissue-Specific Regulation of Plastid Protein Import via Transit-Peptide Motifs. Chu CC, et al. Plant Cell, 2020 Apr. PMID 32075863, Free PMC Article
  5. Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress. Youssef A, et al. Plant J, 2010 Feb 1. PMID 19906042

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions.
    Title: Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions.
  2. fibrillin 1a and 1b, interact with each other via a head-to-tail mechanism [fibrillin 1b]
    Title: Arabidopsis thaliana plastoglobule-associated fibrillin 1a interacts with fibrillin 1b in vivo.
  3. This publication concludes a new physiological role for JA, namely acclimation of chloroplasts, and that light/cold stress-related JA biosynthesis is conditioned by the accumulation of plastoglobule-associated FIB1-2 proteins. [FIB1b]
    Title: Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118350.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photoprotection IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in cytosol HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastoglobule HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
Plastid-lipid associated protein PAP / fibrillin family protein
NP_193955.1
  • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 461 Blast hits to 460 proteins in 78 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11765803..11767422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118350.3 → NP_193955.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193955.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49629, Q8LFZ5, Q8VXU7
    UniProtKB/TrEMBL
    A0A5S9XUR1, A0A7G2F1I0
    Conserved Domains (1) summary
    pfam04755
    Location:84 → 301
    PAP_fibrillin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49629.1

Gene LinkOut

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