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nucleotide/nucleic acid binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827703, updated on 18-Sep-2024

Summary

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Official Full Name
nucleotide/nucleic acid binding protein
Primary source
TAIR:AT4G19610
Locus tag
AT4G19610
See related
Araport:AT4G19610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J7.162; F24J7_162
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Genomic context

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Location:
chromosome: 4
Exon count:
15
Sequence:
Chromosome: 4; NC_003075.7 (10677202..10681773)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Cyclin family protein Neighboring gene uncharacterized protein Neighboring gene winged-helix DNA-binding transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_118081.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleotide/nucleic acid binding protein
NP_193696.3
  • nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10677202..10681773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118081.4 → NP_193696.3  nucleotide/nucleic acid binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193696.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FQX7, F4JT92
    Conserved Domains (6) summary
    cd12316
    Location:295 → 368
    RRM3_RBM19_RRM2_MRD1; RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in multiple RNA-binding domain-containing protein 1 (MRD1)
    cd12317
    Location:488 → 559
    RRM4_RBM19_RRM3_MRD1; RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple RNA-binding domain-containing protein 1 (MRD1)
    cd12318
    Location:603 → 683
    RRM5_RBM19_like; RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins
    cd12320
    Location:702 → 777
    RRM6_RBM19_RRM5_MRD1; RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in multiple RNA-binding domain-containing protein 1 (MRD1)
    cd12565
    Location:2 → 77
    RRM1_MRD1; RNA recognition motif 1 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    TIGR01661
    Location:296 → 686
    ELAV_HUD_SF; ELAV/HuD family splicing factor
Nucleotide Protein
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