U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Beta-glucosidase, GBA2 type family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826597, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Beta-glucosidase, GBA2 type family protein
Primary source
TAIR:AT4G10060
Locus tag
AT4G10060
See related
Araport:AT4G10060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28M11.3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
20
Sequence:
Chromosome: 4; NC_003075.7 (6288821..6295402)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome c-2 Neighboring gene esterase/lipase/thioesterase family protein Neighboring gene KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene elongator protein 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Arabidopsis AtGCD3 protein is a glucosylceramidase that preferentially hydrolyzes long-acyl-chain glucosylceramides. Dai GY, et al. J Biol Chem, 2020 Jan 17. PMID 31819005, Free PMC Article
  2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001340650.1
NM_117074.8

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucosylceramidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingolipid metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Beta-glucosidase, GBA2 type family protein
NP_192744.6
  • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6288821..6295402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117074.8 → NP_192744.6  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192744.6

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRL0, F4JLJ2, Q8LPR0
    Conserved Domains (2) summary
    pfam04685
    Location:493 → 855
    DUF608; Protein of unknown function, DUF608
    pfam12215
    Location:99 → 403
    GBA2_N; beta-Glucocerebrosidase 2 N terminal

  2. NM_001340650.1 → NP_001329211.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRL0, F4JLJ2, Q8LPR0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools