U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT3G61240 DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825296, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
AT3G61240
Gene description
DEA(D/H)-box RNA helicase family protein
Primary source
Araport:AT3G61240
Locus tag
AT3G61240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT3G61240 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (22666147..22669757)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene myb domain protein 17 Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs. Chantarachot T, et al. Nat Plants, 2020 Jun. PMID 32483330
  2. A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern. Schiaffini M, et al. Plant Physiol, 2022 Feb 4. PMID 34791434, Free PMC Article
  3. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
    Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_115988.3
NM_202743.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DEA(D/H)-box RNA helicase family protein
NP_191683.1
  • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 53038 Blast hits to 46572 proteins in 3157 species: Archae - 705; Bacteria - 22269; Metazoa - 8742; Fungi - 5746; Plants - 2904; Viruses - 84; Other Eukaryotes - 12588 (source: NCBI BLink).
NP_974472.1
  • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22666147..22669757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115988.3 → NP_191683.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191683.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M2E0, Q9ZS08
    UniProtKB/TrEMBL
    A0A178V5T0, A0A178VX07, A0A5S9XPG7
    Conserved Domains (2) summary
    PRK01297
    Location:69 → 485
    PRK01297; ATP-dependent RNA helicase RhlB; Provisional
    cd17940
    Location:126 → 326
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  2. NM_202743.1 → NP_974472.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974472.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M2E0, Q9ZS08
    UniProtKB/TrEMBL
    A0A178V5T0, A0A178VX07, A0A5S9XPG7
    Conserved Domains (2) summary
    PRK01297
    Location:69 → 485
    PRK01297; ATP-dependent RNA helicase RhlB; Provisional
    cd17940
    Location:126 → 326
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2E0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools