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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 822406, updated on 11-Sep-2024

Summary

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Primary source
TAIR:AT3G27860
Locus tag
AT3G27860
See related
Araport:AT3G27860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (10325834..10328323)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene ribosomal protein L12-C Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis PWWP domain proteins mediate H3K27 trimethylation on FLC and regulate flowering time. Zhou JX, et al. J Integr Plant Biol, 2018 May. PMID 29314758
  2. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338913.1
NM_113702.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of ESC/E(Z) complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tudor/PWWP/MBT superfamily protein
NP_001319658.1
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G40340.1); Has 273 Blast hits to 255 proteins in 49 species: Archae - 0; Bacteria - 5; Metazoa - 65; Fungi - 14; Plants - 156; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10325834..10328323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338913.1 → NP_001319658.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK91
    UniProtKB/TrEMBL
    A0A654FBA9, A0A7G2ESK5
    Conserved Domains (1) summary
    cl02554
    Location:61 → 146
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

  2. NM_113702.2 → NP_189424.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189424.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK91
    UniProtKB/TrEMBL
    A0A654FBA9, A0A7G2ESK5
    Conserved Domains (1) summary
    cl02554
    Location:61 → 146
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LK91.1

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