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LBD25 LOB domain-containing protein 25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822387, updated on 18-Sep-2024

Summary

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Official Symbol
LBD25
Official Full Name
LOB domain-containing protein 25
Primary source
TAIR:AT3G27650
Locus tag
AT3G27650
See related
Araport:AT3G27650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LOB domain-containing protein 25
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (10238514..10240648)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene oleosin 4 Neighboring gene ARM repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Misregulation of the LOB domain gene DDA1 suggests possible functions in auxin signalling and photomorphogenesis. Mangeon A, et al. J Exp Bot, 2011 Jan. PMID 20797997, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DDA1 (LBD25) functions in both the auxin signalling and photomorphogenesis pathways.
    Title: Misregulation of the LOB domain gene DDA1 suggests possible functions in auxin signalling and photomorphogenesis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_113681.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOB domain-containing protein 25
NP_566823.1
  • LOB domain-containing protein 25 (LBD25); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT5G63090.4); Has 960 Blast hits to 955 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 960; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10238514..10240648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113681.2 → NP_566823.1  LOB domain-containing protein 25 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566823.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG57, Q75PS1, Q8L8Q3, Q8W1D6, Q9LVX4
    UniProtKB/TrEMBL
    A0A178VKF4, A0A178VL46, A0A5S9XGJ4
    Conserved Domains (1) summary
    pfam03195
    Location:39 → 137
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L8Q3.3

Gene LinkOut

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