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AT3G19390 Granulin repeat cysteine protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821473, updated on 7-Sep-2023

Summary

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Gene symbol
AT3G19390
Gene description
Granulin repeat cysteine protease family protein
Primary source
Araport:AT3G19390
Locus tag
AT3G19390
See related
TAIR:AT3G19390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G19390 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (6722825..6725110)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene filament-like protein (DUF869) Neighboring gene plant U-box 25 Neighboring gene Cysteine proteinases superfamily protein Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Kunitz-type protease inhibitor regulates programmed cell death during flower development in Arabidopsis thaliana. Boex-Fontvieille E, et al. J Exp Bot, 2015 Oct. PMID 26160583
  2. Arabidopsis protein disulfide isomerase-5 inhibits cysteine proteases during trafficking to vacuoles before programmed cell death of the endothelium in developing seeds. Andème Ondzighi C, et al. Plant Cell, 2008 Aug. PMID 18676877, Free PMC Article
  3. PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. Nishimura N, et al. Plant J, 2010 Jan. PMID 19874541, Free PMC Article
  4. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Huang H, et al. Mol Cell Proteomics, 2016 Jan. PMID 26545401, Free PMC Article
  5. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112826.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Granulin repeat cysteine protease family protein
NP_566633.1
  • Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 9061 Blast hits to 8168 proteins in 770 species: Archae - 67; Bacteria - 297; Metazoa - 4335; Fungi - 6; Plants - 1937; Viruses - 140; Other Eukaryotes - 2279 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6722825..6725110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112826.4 → NP_566633.1  Granulin repeat cysteine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566633.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LT78
    UniProtKB/TrEMBL
    A0A178VHV4, A0A5S9XDS3
    Conserved Domains (3) summary
    smart00277
    Location:364 → 420
    GRAN; Granulin
    smart00848
    Location:43 → 99
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:129 → 345
    Peptidase_C1; Papain family cysteine protease
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LT78.1

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