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AT3G02560 Ribosomal protein S7e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821308, updated on 7-Sep-2023

Summary

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Gene symbol
AT3G02560
Gene description
Ribosomal protein S7e family protein
Primary source
Araport:AT3G02560
Locus tag
AT3G02560
See related
TAIR:AT3G02560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16B3.19; F16B3_19
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Genomic context

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See AT3G02560 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (541708..543385)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 41 Neighboring gene uncharacterized protein Neighboring gene Mannose-6-phosphate isomerase, type I Neighboring gene sterol 1 Neighboring gene Fatty acid hydroxylase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  2. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001337417.1
NM_111124.4
NM_180173.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in cytosol HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S7e family protein
NP_001319452.1
  • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
NP_186905.1
  • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    541708..543385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111124.4 → NP_186905.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186905.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M885
    UniProtKB/TrEMBL
    A0A178VB48, A0A5S9X8G9, A0A654G1M2
    Conserved Domains (1) summary
    pfam01251
    Location:7 → 188
    Ribosomal_S7e; Ribosomal protein S7e

  2. NM_001337417.1 → NP_001319452.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M885
    UniProtKB/TrEMBL
    A0A178VB48, A0A5S9X8G9, A0A654G1M2
    Conserved Domains (1) summary
    pfam01251
    Location:7 → 188
    Ribosomal_S7e; Ribosomal protein S7e

  3. NM_180173.2 → NP_850504.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850504.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M885
    UniProtKB/TrEMBL
    A0A178VB48, A0A5S9X8G9, A0A654G1M2
    Conserved Domains (1) summary
    pfam01251
    Location:7 → 188
    Ribosomal_S7e; Ribosomal protein S7e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M885.1

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