RSH2 RELA/SPOT homolog 2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RSH2
Official Full Name: RELA/SPOT homolog 2
Primary source: TAIR:AT3G14050
Locus tag: AT3G14050
See related: Araport:AT3G14050
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AT-RSH2; ATRSH2; RELA-SPOT HOMOLOG 2; RELA/SPOT homolog 2; RELA/SPOT HOMOLOG 2
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Genomic context

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Location:: chromosome: 3

Exon count:: 6

Sequence:: Chromosome: 3; NC_003074.8 (4650714..4654046, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_112259.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables GTP diphosphokinase activity	IEA Inferred from Electronic Annotation more info
enables GTP diphosphokinase activity	IGI Inferred from Genetic Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in guanosine tetraphosphate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to wounding	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RELA/SPOT homolog 2

NP_188021.1

RELA/SPOT homolog 2 (RSH2); CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 12447 Blast hits to 12322 proteins in 2456 species: Archae - 4; Bacteria - 8610; Metazoa - 164; Fungi - 55; Plants - 218; Viruses - 2; Other Eukaryotes - 3394 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

4650714..4654046 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112259.5 → NP_188021.1 RELA/SPOT homolog 2 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_188021.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LVJ3

UniProtKB/TrEMBL

A0A5S9XBZ0, A0A654F8N2

Conserved Domains (3) summary

COG0317
Location:190 → 550

SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]

pfam04607
Location:427 → 537

RelA_SpoT; Region found in RelA / SpoT proteins

pfam13328
Location:214 → 368

HD_4; HD domain