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ABCE1 RNAse l inhibitor protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820568, updated on 18-Sep-2024

Summary

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Official Symbol
ABCE1
Official Full Name
RNAse l inhibitor protein 1
Primary source
TAIR:AT3G13640
Locus tag
AT3G13640
See related
Araport:AT3G13640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATP-binding cassette E1; ATRLI1; RLI1; RNAse l inhibitor protein 1
Summary
member of RLI subfamily
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Genomic context

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See ABCE1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (4458389..4461844, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112210.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNAse l inhibitor protein 1
NP_187973.1
  • RNAse l inhibitor protein 1 (RLI1); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S binding domain (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 2 (TAIR:AT4G19210.1); Has 520439 Blast hits to 315557 proteins in 3815 species: Archae - 10736; Bacteria - 429136; Metazoa - 8543; Fungi - 4048; Plants - 4551; Viruses - 17; Other Eukaryotes - 63408 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4458389..4461844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112210.3 → NP_187973.1  RNAse l inhibitor protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187973.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LID6
    UniProtKB/TrEMBL
    A0A178VIQ0, A0A5S9XC13, A0A654FC47
    Conserved Domains (1) summary
    COG1245
    Location:4 → 601
    Rli1; Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LID6.1

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