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DDI1 ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820522, updated on 15-Feb-2024

Summary

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Gene symbol
DDI1
Gene description
ubiquitin family protein
Primary source
Araport:AT3G13235
Locus tag
AT3G13235
See related
TAIR:AT3G13235
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DNA-damage inducible 1
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Genomic context

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See DDI1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (4271212..4274487, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene kinesin-like protein (DUF868) Neighboring gene RNA-binding KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The defective proteasome but not substrate recognition function is responsible for the null phenotypes of the Arabidopsis proteasome subunit RPN10. Lin YL, et al. Plant Cell, 2011 Jul. PMID 21764993, Free PMC Article
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202947.1
NM_001202948.2
NM_112168.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
ubiquitin family protein
NP_001189876.1
  • ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060).
NP_001189877.1
  • ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060).
NP_566451.1
  • ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); Has 8885 Blast hits to 4319 proteins in 604 species: Archae - 0; Bacteria - 8; Metazoa - 3791; Fungi - 1215; Plants - 2329; Viruses - 83; Other Eukaryotes - 1459 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4271212..4274487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202948.2 → NP_001189877.1  ubiquitin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189877.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJ92, Q1EBV4, Q8LF25, Q9LTU5
    UniProtKB/TrEMBL
    A0A384L6E9, A0A5S9XBN5, A0A7G2EI45
    Conserved Domains (4) summary
    cd05479
    Location:186 → 309
    RP_DDI; retropepsin-like domain of DNA damage inducible protein
    PRK12545
    Location:132 → 211
    PRK12545; RNA polymerase factor sigma-70
    cd14309
    Location:377 → 412
    UBA_scDdi1_like; UBA domain found in Saccharomyces cerevisiae DNA-damage response protein Ddi1 and similar proteins
    cd01796
    Location:1 → 71
    Ubl_Ddi1_like; ubiquitin-like (Ubl) domain found in the eukaryotic Ddi1 family

  2. NM_001202947.1 → NP_001189876.1  ubiquitin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189876.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EI45, F4JC86
    Conserved Domains (4) summary
    cd05479
    Location:185 → 308
    RP_DDI; RP_DDI; retropepsin-like domain of DNA damage inducible protein
    cd01796
    Location:3 → 72
    DDI1_N; DNA damage inducible protein 1 ubiquitin-like domain
    smart00213
    Location:1 → 72
    UBQ; Ubiquitin homologues
    cd14309
    Location:376 → 411
    UBA_scDdi1_like; UBA domain found in Saccharomyces cerevisiae DNA-damage response protein Ddi1 and similar proteins

  3. NM_112168.5 → NP_566451.1  ubiquitin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566451.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJ92, Q1EBV4, Q8LF25, Q9LTU5
    UniProtKB/TrEMBL
    A0A384L6E9, A0A5S9XBN5, A0A7G2EI45
    Conserved Domains (4) summary
    cd05479
    Location:186 → 309
    RP_DDI; retropepsin-like domain of DNA damage inducible protein
    PRK12545
    Location:132 → 211
    PRK12545; RNA polymerase factor sigma-70
    cd14309
    Location:377 → 412
    UBA_scDdi1_like; UBA domain found in Saccharomyces cerevisiae DNA-damage response protein Ddi1 and similar proteins
    cd01796
    Location:1 → 71
    Ubl_Ddi1_like; ubiquitin-like (Ubl) domain found in the eukaryotic Ddi1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1EBV4.1

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