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EMB2016 embryo defective 2016 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819736, updated on 18-Sep-2024

Summary

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Official Symbol
EMB2016
Official Full Name
embryo defective 2016
Primary source
TAIR:AT3G05680
Locus tag
AT3G05680
See related
Araport:AT3G05680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 2016; F18C1.5; F18C1_5
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Genomic context

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Location:
chromosome: 3
Exon count:
28
Sequence:
Chromosome: 3; NC_003074.8 (1660523..1672608, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene Cystatin/monellin superfamily protein Neighboring gene nuclear factor Y, subunit A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. N(6)-methyladenosine RNA modification regulates photosynthesis during photodamage in plants. Zhang M, et al. Nat Commun, 2022 Dec 2. PMID 36460653, Free PMC Article
  2. N(6) -Methyladenosine mRNA methylation is important for salt stress tolerance in Arabidopsis. Hu J, et al. Plant J, 2021 Jun. PMID 33843075
  3. Identification of factors required for m(6) A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI. Růžička K, et al. New Phytol, 2017 Jul. PMID 28503769, Free PMC Article
  4. Identification of genes required for embryo development in Arabidopsis. Tzafrir I, et al. Plant Physiol, 2004 Jul. PMID 15266054, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_111442.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA methyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within mRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photoprotection IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA N6-methyladenosine methyltransferase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear speck IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
embryo defective 2016
NP_001319481.1
  • embryo defective 2016 (EMB2016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown.
NP_187219.5
  • embryo defective 2016 (EMB2016); Has 4102 Blast hits to 3495 proteins in 322 species: Archae - 0; Bacteria - 116; Metazoa - 1947; Fungi - 730; Plants - 417; Viruses - 33; Other Eukaryotes - 859 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1660523..1672608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337599.1 → NP_001319481.1  embryo defective 2016 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J8G6, F4J8G7, Q9M9X3
    UniProtKB/TrEMBL
    A0A178VCQ7, A0A7G2EIN6
    Conserved Domains (3) summary
    smart00818
    Location:1966 → 2062
    Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
    PHA03378
    Location:1872 → 2050
    PHA03378; EBNA-3B; Provisional
    pfam15912
    Location:4 → 126
    VIR_N; Virilizer, N-terminal

  2. NM_111442.7 → NP_187219.5  embryo defective 2016 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187219.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J8G6, F4J8G7, Q9M9X3
    UniProtKB/TrEMBL
    A0A178VCQ7, A0A7G2EIN6
    Conserved Domains (3) summary
    smart00818
    Location:1966 → 2062
    Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
    PHA03378
    Location:1872 → 2050
    PHA03378; EBNA-3B; Provisional
    pfam15912
    Location:4 → 126
    VIR_N; Virilizer, N-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J8G7.1

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