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RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818443, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding KH domain-containing protein
Primary source
TAIR:AT2G38610
Locus tag
AT2G38610
See related
Araport:AT2G38610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6A23.19; T6A23_19
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (16147106..16149934, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene cyclin-dependent kinase B1;2 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene LURP-one-like protein (DUF567)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Characterization and Expression Analysis of KH Family Genes Response to ABA and SA in Arabidopsis thaliana. Zhang Y, et al. Int J Mol Sci, 2022 Jan 3. PMID 35008936, Free PMC Article
  2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_129418.3
NM_179965.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salicylic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding KH domain-containing protein
NP_181395.1
  • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G08620.1); Has 1345 Blast hits to 1344 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 813; Fungi - 157; Plants - 284; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
NP_850296.1
  • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G08620.1); Has 1345 Blast hits to 1344 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 813; Fungi - 157; Plants - 284; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16147106..16149934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179965.4 → NP_850296.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850296.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVI3
    UniProtKB/TrEMBL
    A0A178W1F1, A0A5S9X565, A0A7G2EFF8
    Conserved Domains (2) summary
    pfam16544
    Location:29 → 75
    STAR_dimer; Homodimerization region of STAR domain protein
    cl00098
    Location:135 → 235
    KH-I; K homology (KH) RNA-binding domain, type I

  2. NM_129418.3 → NP_181395.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181395.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVI3
    UniProtKB/TrEMBL
    A0A178W1F1, A0A5S9X565, A0A7G2EFF8
    Conserved Domains (2) summary
    pfam16544
    Location:29 → 75
    STAR_dimer; Homodimerization region of STAR domain protein
    cl00098
    Location:135 → 235
    KH-I; K homology (KH) RNA-binding domain, type I
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVI3.1

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