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GPI inositol-deacylase C, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817788, updated on 18-Sep-2024

Summary

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Official Full Name
GPI inositol-deacylase C, putative (DUF1218)
Primary source
TAIR:AT2G32280
Locus tag
AT2G32280
See related
Araport:AT2G32280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32F6.20; T32F6_20; VASCULATURE COMPLEXITY AND CONNECTIVITY; VCC
Summary
Encodes a member of a plant-specific gene family that is required for embryo provasculature development. The gene product regulates vascular network complexity and connectivity in cotyledons.
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (13712928..13715208)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene beta-amylase 6 Neighboring gene miscRNA Neighboring gene EXS (ERD1/XPR1/SYG1) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The VASCULATURE COMPLEXITY AND CONNECTIVITY gene encodes a plant-specific protein required for embryo provasculature development. Roschzttardtz H, et al. Plant Physiol, 2014 Oct. PMID 25149602, Free PMC Article
  2. Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves. Wilson-Sánchez D, et al. New Phytol, 2018 Feb. PMID 29139551
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336384.1
NM_128787.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cotyledon development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cotyledon vascular tissue pattern formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within determination of bilateral symmetry IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular auxin homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf vascular tissue pattern formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within phloem or xylem histogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
GPI inositol-deacylase C, putative (DUF1218)
NP_180787.1
  • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1); Has 170 Blast hits to 169 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13712928..13715208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128787.4 → NP_180787.1  GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180787.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VR11, Q9ZV57
    UniProtKB/TrEMBL
    A0A384LLA3
    Conserved Domains (1) summary
    pfam06749
    Location:58 → 146
    DUF1218; Protein of unknown function (DUF1218)

  2. NM_001336384.1 → NP_001323429.1  GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VR11, Q9ZV57
    UniProtKB/TrEMBL
    A0A384LLA3
    Conserved Domains (1) summary
    pfam06749
    Location:58 → 146
    DUF1218; Protein of unknown function (DUF1218)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZV57.1

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