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AT2G30710 Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817622, updated on 7-Sep-2023

Summary

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Gene symbol
AT2G30710
Gene description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Primary source
Araport:AT2G30710
Locus tag
AT2G30710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T11J7.10; T11J7_10
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Genomic context

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See AT2G30710 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (13085886..13089287, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene lateral signaling target-like protein (Protein of unknown function, DUF593) Neighboring gene bacterial trigger factor Neighboring gene GPI-anchored protein Neighboring gene Thioesterase/thiol ester dehydrase-isomerase superfamily protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128624.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ypt/Rab-GAP domain of gyp1p superfamily protein
NP_565706.1
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.2); Has 4509 Blast hits to 4436 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 783; Plants - 598; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13085886..13089287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128624.2 → NP_565706.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565706.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNP5, O49336, Q94JZ5
    Conserved Domains (2) summary
    COG5210
    Location:14 → 439
    COG5210; GTPase-activating protein [General function prediction only]
    pfam00566
    Location:200 → 392
    RabGAP-TBC; Rab-GTPase-TBC domain
Nucleotide Protein
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