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PNAS-3-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817074, updated on 18-Sep-2024

Summary

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Official Full Name
PNAS-3-like protein
Primary source
TAIR:AT2G25355
Locus tag
AT2G25355
See related
Araport:AT2G25355
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (10801091..10803722)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene low-molecular-weight cysteine-rich 14 Neighboring gene Phox (PX) domain-containing protein Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084489.1
NM_128093.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PNAS-3-like protein
NP_001077958.1
  • PNAS-3 related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT4G32175.1); Has 398 Blast hits to 398 proteins in 199 species: Archae - 22; Bacteria - 0; Metazoa - 114; Fungi - 132; Plants - 59; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
NP_565592.1
  • PNAS-3 related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT4G32175.1); Has 410 Blast hits to 410 proteins in 205 species: Archae - 27; Bacteria - 0; Metazoa - 113; Fungi - 136; Plants - 59; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10801091..10803722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128093.3 → NP_565592.1  PNAS-3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565592.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VR99, A0A654EW02, Q94AW9
    Conserved Domains (3) summary
    cd05790
    Location:71 → 156
    S1_Rrp40; Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    pfam18311
    Location:34 → 71
    Rrp40_N; Exosome complex exonuclease Rrp40 N-terminal domain
    cd22526
    Location:158 → 236
    KH-I_Rrp40; type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins

  2. NM_001084489.1 → NP_001077958.1  PNAS-3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077958.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EW02, A8MQZ8
    Conserved Domains (2) summary
    cd05790
    Location:43 → 128
    S1_Rrp40; S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
    pfam15985
    Location:131 → 176
    KH_6; KH domain
Nucleotide Protein
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