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LOC8075570 uncharacterized LOC8075570 [ Sorghum bicolor (sorghum) ]

Gene ID: 8075570, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8075570
Gene description
uncharacterized LOC8075570
Locus tag
SORBI_3003G294600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (62693176..62703671, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene VQ motif-containing protein 4 Neighboring gene dynamin-related protein 5A Neighboring gene early nodulin-like protein 1 Neighboring gene uncharacterized LOC8075573

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC8075570

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    62693176..62703671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021455137.1 → XP_021310812.1  uncharacterized protein LOC8075570

    UniProtKB/TrEMBL
    A0A921RFM9, C5XK29
    Conserved Domains (4) summary
    smart00389
    Location:1037 → 1093
    HOX; Homeodomain
    cd00086
    Location:799 → 850
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    cd15504
    Location:477 → 529
    PHD_PRHA_like; PHD finger found in Arabidopsis thaliana pathogenesis-related homeodomain protein (PRHA) and similar proteins
    NF033609
    Location:18 → 316
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  2. XM_002458438.2 → XP_002458483.2  uncharacterized protein LOC8075570

    UniProtKB/TrEMBL
    A0A921RFM9, C5XK29
    Conserved Domains (4) summary
    smart00389
    Location:1037 → 1093
    HOX; Homeodomain
    cd00086
    Location:799 → 850
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    cd15504
    Location:477 → 529
    PHD_PRHA_like; PHD finger found in Arabidopsis thaliana pathogenesis-related homeodomain protein (PRHA) and similar proteins
    NF033609
    Location:18 → 316
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
Nucleotide Protein
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