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LOC8067268 GATA transcription factor 18 [ Sorghum bicolor (sorghum) ]

Gene ID: 8067268, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8067268
Gene description
GATA transcription factor 18
Locus tag
SORBI_3001G135400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (10671866..10676396)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene recQ-mediated genome instability protein 2 Neighboring gene uncharacterized LOC8054166 Neighboring gene E3 ubiquitin-protein ligase UPL7 Neighboring gene GDSL esterase/lipase At3g53100

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    10671866..10676396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002464028.2 → XP_002464073.1  GATA transcription factor 18

    See identical proteins and their annotated locations for XP_002464073.1

    UniProtKB/TrEMBL
    A0A921UXK6, C5WPL5
    Conserved Domains (3) summary
    cd00202
    Location:213 → 269
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam06200
    Location:74 → 107
    tify; tify domain
    pfam06203
    Location:142 → 182
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version

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Research Materials