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LOC8055813 transcription factor bHLH30 [ Sorghum bicolor (sorghum) ]

Gene ID: 8055813, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8055813
Gene description
transcription factor bHLH30
Locus tag
SORBI_3002G198500
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8055813 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (58845229..58847885, complement)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 2-like Neighboring gene uncharacterized LOC8055809 Neighboring gene transcription factor PCF5 Neighboring gene NAD(P)H-quinone oxidoreductase subunit L, chloroplastic Neighboring gene uncharacterized LOC110432345 Neighboring gene uncharacterized LOC8060235

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    58845229..58847885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002462320.2 → XP_002462365.1  transcription factor bHLH30

    See identical proteins and their annotated locations for XP_002462365.1

    UniProtKB/TrEMBL
    A0A921UUE9, C5XC82
    Conserved Domains (2) summary
    cd11455
    Location:109 → 171
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
    cl09141
    Location:217 → 260
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Nucleotide Protein
Heading Accession and Version

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