U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8051577 ubiquitin carboxyl-terminal hydrolase 43 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8051577, updated on 26-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LOC8051577
Gene description
ubiquitin carboxyl-terminal hydrolase 43
See related
VectorBase:ISCP_003407; EnsemblRapid:LOC8051577
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8051577 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609881.1 (80320338..80387254)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388715.1 (13512..54675)

NW_024609881.1Genomic Context describing neighboring genes Neighboring gene class A basic helix-loop-helix protein 15 Neighboring gene uncharacterized LOC121833062 Neighboring gene uncharacterized LOC120839390 Neighboring gene BAI1-associated protein 3 Neighboring gene glutamate receptor ionotropic, NMDA 2B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin carboxyl-terminal hydrolase 43

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609881.1 Reference ASM1692078v2

    Range
    80320338..80387254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042294413.1 → XP_042150347.1  ubiquitin carboxyl-terminal hydrolase 43

    UniProtKB/TrEMBL
    A0A4D5RI89
    Related
    XP_042150347.1, XM_042294413.1
    Conserved Domains (1) summary
    COG5560
    Location:135 → 725
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases