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LOC8042898 lupus La protein [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8042898, updated on 10-May-2024

Summary

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Gene symbol
LOC8042898
Gene description
lupus La protein
See related
VectorBase:ISCP_002085; EnsemblRapid:LOC8042898
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
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Genomic context

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See LOC8042898 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609884.1 (84214412..84241623)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024390021.1 (503146..529328)

NW_024609884.1Genomic Context describing neighboring genes Neighboring gene nitric oxide-associated protein 1 Neighboring gene phosphatidylinositide phosphatase SAC2 Neighboring gene armadillo repeat-containing protein 8 Neighboring gene transfer RNA tyrosine (anticodon AUA) Neighboring gene bromodomain-containing protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lupus La protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609884.1 Reference ASM1692078v2

    Range
    84214412..84241623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042287487.1 → XP_042143421.1  lupus La protein

    Related
    XP_042143421.1, XM_042287487.1
    Conserved Domains (3) summary
    cd08028
    Location:14 → 93
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:114 → 185
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:227 → 303
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins

  2. XM_029991642.3 → XP_029847502.1  lupus La protein

    Related
    XP_029847502.1, XM_029991642.3
    Conserved Domains (3) summary
    cd08028
    Location:14 → 93
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:114 → 185
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:227 → 303
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins
Nucleotide Protein
Heading Accession and Version

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