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LOC8041809 activator of basal transcription 1 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8041809, updated on 26-Mar-2024

Summary

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Gene symbol
LOC8041809
Gene description
activator of basal transcription 1
See related
VectorBase:ISCP_010692; EnsemblRapid:LOC8041809
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
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Genomic context

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See LOC8041809 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609838.1 (6772705..6773728, complement)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388700.1 (382588..383615)

NW_024609838.1Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate aminotransferase, mitochondrial Neighboring gene uncharacterized LOC8031511 Neighboring gene uncharacterized LOC8031510 Neighboring gene dentin sialophosphoprotein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small-subunit processome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activator of basal transcription 1
Names
putative activator of basal transcription

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609838.1 Reference ASM1692078v2

    Range
    6772705..6773728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002414985.5 → XP_002415030.5  activator of basal transcription 1

    UniProtKB/TrEMBL
    A0A4D5RKW9
    Related
    XP_002415030.5, XM_002414985.5
    Conserved Domains (2) summary
    TIGR01628
    Location:54 → 203
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:53 → 125
    RRM; RNA recognition motif
Nucleotide Protein
Heading Accession and Version

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