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LOC8035146 copine-8 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8035146, updated on 31-Jul-2024

Summary

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Gene symbol
LOC8035146
Gene description
copine-8
See related
VectorBase:ISCP_034304; EnsemblRapid:LOC8035146
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
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Genomic context

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See LOC8035146 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609839.1 (58250976..58277262, complement)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024387796.1 (437399..463686, complement)

NW_024609839.1Genomic Context describing neighboring genes Neighboring gene glutamine synthetase, mitochondrial Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene uncharacterized LOC121835546 Neighboring gene copine-8 Neighboring gene beta-sarcoglycan Neighboring gene pasiflora 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copine-8
Names
putative copine

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609839.1 Reference ASM1692078v2

    Range
    58250976..58277262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029986992.3 → XP_029842852.2  copine-8 isoform X2

    UniProtKB/TrEMBL
    A0A4D5RLA6
    Related
    XP_029842852.2, XM_029986992.3
    Conserved Domains (3) summary
    cd04047
    Location:149 → 260
    C2B_Copine; C2 domain second repeat in Copine
    cd04048
    Location:14 → 136
    C2A_Copine; C2 domain first repeat in Copine
    cd01459
    Location:266 → 523
    vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

  2. XM_029986991.4 → XP_029842851.2  copine-8 isoform X1

    UniProtKB/TrEMBL
    A0A4D5RLA6
    Related
    XP_029842851.2, XM_029986991.4
    Conserved Domains (3) summary
    cd04047
    Location:149 → 261
    C2B_Copine; C2 domain second repeat in Copine
    cd04048
    Location:14 → 136
    C2A_Copine; C2 domain first repeat in Copine
    cd01459
    Location:267 → 524
    vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
Nucleotide Protein
Heading Accession and Version

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