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LOC8033748 Golgi-associated PDZ and coiled-coil motif-containing protein [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8033748, updated on 26-Mar-2024

Summary

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Gene symbol
LOC8033748
Gene description
Golgi-associated PDZ and coiled-coil motif-containing protein
See related
VectorBase:ISCP_034720; EnsemblRapid:LOC8033748
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
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Genomic context

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See LOC8033748 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609857.1 (12034568..12072749)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024389608.1 (84375..115124, complement)

NW_024609857.1Genomic Context describing neighboring genes Neighboring gene DDB1- and CUL4-associated factor 6 Neighboring gene mesoderm-specific transcript protein Neighboring gene SET domain-containing protein 4 Neighboring gene uncharacterized LOC115323762 Neighboring gene SH3 domain-binding glutamic acid-rich protein homolog Neighboring gene mediator complex subunit 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated PDZ and coiled-coil motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609857.1 Reference ASM1692078v2

    Range
    12034568..12072749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029984147.4 → XP_029840007.3  Golgi-associated PDZ and coiled-coil motif-containing protein

    UniProtKB/TrEMBL
    A0A4D5RNC8
    Related
    XP_029840007.3, XM_029984147.4
    Conserved Domains (2) summary
    COG1196
    Location:7 → 213
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00992
    Location:258 → 339
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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