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Josd Josephin domain containing [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8025771, updated on 23-May-2024

Summary

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Gene symbol
Josd
Gene description
Josephin domain containing
See related
VectorBase:ISCP_007035; EnsemblRapid:LOC8025771
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
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Genomic context

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See Josd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609881.1 (123238299..123248974)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388329.1 (86618..97354, complement)

NW_024609881.1Genomic Context describing neighboring genes Neighboring gene protein ecdysoneless homolog Neighboring gene ankyrin repeat and LEM domain-containing protein 1-like Neighboring gene uncharacterized LOC8026866 Neighboring gene uncharacterized LOC120836390 Neighboring gene sorting nexin-29 Neighboring gene zinc finger protein 182 Neighboring gene ribosomal protein L10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
josephin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609881.1 Reference ASM1692078v2

    Range
    123238299..123248974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040502928.2 → XP_040358862.1  josephin-1 isoform X4

    UniProtKB/TrEMBL
    B7P7H9
    Related
    XP_040358862.1, XM_040502928.2

  2. XM_029969758.4 → XP_029825618.1  josephin-1 isoform X3

    UniProtKB/TrEMBL
    B7P7H9
    Related
    XP_029825618.1, XM_029969758.4
    Conserved Domains (1) summary
    pfam02099
    Location:33 → 187
    Josephin

  3. XM_029969757.4 → XP_029825617.1  josephin-1 isoform X1

    UniProtKB/TrEMBL
    B7P7H9
    Related
    XP_029825617.1, XM_029969757.4
    Conserved Domains (1) summary
    pfam02099
    Location:41 → 195
    Josephin

  4. XM_002399181.5 → XP_002399222.2  josephin-1 isoform X2

    UniProtKB/TrEMBL
    B7P7H9
    Related
    XP_002399222.2, XM_002399181.5
    Conserved Domains (1) summary
    pfam02099
    Location:41 → 194
    Josephin
Nucleotide Protein
Heading Accession and Version

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