zgc:162962 zgc:162962 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:162962provided by ZNC
Official Full Name: zgc:162962provided by ZNC
Primary source: ZFIN:ZDB-GENE-070424-76
See related: Ensembl:ENSDARG00000116765 AllianceGenome:ZFIN:ZDB-GENE-070424-76
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (44239696..44256095)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (44226892..44232652)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC798203; zinc finger and SCAN domain containing 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110482.2 → NP_001103952.2 uncharacterized protein LOC798203 isoform a

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes the longer isoform (a).

Source sequence(s)

CU929391, EH589973, EH607448

UniProtKB/TrEMBL

A0A2R8Q532, A0A8M1NF99

Related

ENSDARP00000148195.1, ENSDART00000193503.1

Conserved Domains (3) summary

COG5048
Location:126 → 290

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:270 → 290

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:311 → 335

zf-H2C2_2; Zinc-finger double domain
NM_001302640.1 → NP_001289569.1 uncharacterized protein LOC798203 isoform b

Status: VALIDATED

Description

Transcript Variant: This variant (2) contains an additional alternate exon, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.

Source sequence(s)

CU929391, EH589973, EH607448

UniProtKB/TrEMBL

A0A2R8RUY8, A0A8M1P140

Related

ENSDARP00000151454.1, ENSDART00000186162.1

Conserved Domains (3) summary

COG5048
Location:119 → 283

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:263 → 283

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:304 → 328

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007126.7 Reference GRCz11 Primary Assembly

Range

44239696..44256095

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021466289.1 → XP_021321964.1 zinc finger and SCAN domain containing 2-like isoform X1

UniProtKB/TrEMBL

A0A8M9PC45

Conserved Domains (3) summary

COG5048
Location:257 → 674

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:607 → 627

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:161 → 186

zf-H2C2_2; Zinc-finger double domain