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chst12b.4 carbohydrate sulfotransferase 12b, tandem duplicate 4 [ Danio rerio (zebrafish) ]

Gene ID: 797712, updated on 12-Sep-2024

Summary

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Official Symbol
chst12b.4provided by ZNC
Official Full Name
carbohydrate sulfotransferase 12b, tandem duplicate 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-166
See related
Ensembl:ENSDARG00000093636 AllianceGenome:ZFIN:ZDB-GENE-090312-166
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-26i13.5
Summary
Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See chst12b.4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (11614932..11618263, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (10928132..10929444, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 12b, tandem duplicate 6 Neighboring gene carbohydrate sulfotransferase 12b, tandem duplicate 5 Neighboring gene carbohydrate sulfotransferase 12b, tandem duplicate 2 Neighboring gene carbohydrate sulfotransferase 12b, tandem duplicate 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chondroitin / dermatan sulfate modification enzymes in zebrafish development. Habicher J, et al. PLoS One, 2015. PMID 25793894, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    11614932..11618263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001338142.6 → XP_001338178.3  carbohydrate sulfotransferase 12-like

    UniProtKB/TrEMBL
    A0A8M1Q1N4
    Related
    ENSDARP00000156849.1, ENSDART00000188891.1
    Conserved Domains (1) summary
    pfam03567
    Location:85 → 331
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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