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ranbp10 RAN binding protein 10 [ Danio rerio (zebrafish) ]

Gene ID: 793293, updated on 12-Sep-2024

Summary

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Official Symbol
ranbp10provided by ZNC
Official Full Name
RAN binding protein 10provided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-86
See related
Ensembl:ENSDARG00000062138 AllianceGenome:ZFIN:ZDB-GENE-070705-86
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-193l7.1
Summary
Predicted to be involved in cell surface receptor signaling pathway and cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human RANBP10 (RAN binding protein 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ranbp10 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (21951465..22022514)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (21962435..22033430)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene enhancer of mRNA decapping 4 Neighboring gene nuclear transport factor 2 Neighboring gene translin-associated factor X interacting protein 1 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene uncharacterized LOC100320750 Neighboring gene zgc:158868

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Alkbh4 and Atrn Act Maternally to Regulate Zebrafish Epiboly. Sun Q, et al. Int J Biol Sci, 2017. PMID 28924386, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ran-binding protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045050.2 → NP_001038515.1  ran-binding protein 10

    See identical proteins and their annotated locations for NP_001038515.1

    Status: VALIDATED

    Source sequence(s)
    CT025923, CT573140
    UniProtKB/Swiss-Prot
    A5WVR4, Q1LUS8
    Conserved Domains (5) summary
    smart00667
    Location:245 → 270
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:279 → 335
    CTLH; C-terminal to LisH motif
    smart00757
    Location:491 → 588
    CRA; CT11-RanBPM
    pfam10607
    Location:279 → 576
    CLTH; CTLH/CRA C-terminal to LisH motif domain
    cd12909
    Location:65 → 207
    SPRY_RanBP9_10; SPRY domain in Ran binding proteins 9 and 10

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    21951465..22022514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159142.5 → XP_005159199.1  ran-binding protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A0H2UKF1, A0A8M2B5L8, T1ECW3
    Related
    ENSDARP00000123657.1, ENSDART00000146261.3
    Conserved Domains (5) summary
    smart00667
    Location:245 → 270
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:279 → 335
    CTLH; C-terminal to LisH motif
    smart00757
    Location:496 → 593
    CRA; CT11-RanBPM
    pfam10607
    Location:279 → 333
    CLTH; CTLH/CRA C-terminal to LisH motif domain
    cd12909
    Location:65 → 207
    SPRY_RanBP9_10; SPRY domain in Ran binding proteins 9 and 10

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395341.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    332680..395965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1LUS8.1 GenPept UniProtKB/Swiss-Prot:Q1LUS8

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