abcb6 ATP binding cassette subfamily B member 6 (Langereis blood group) [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: abcb6provided by Xenbase
Official Full Name: ATP binding cassette subfamily B member 6 (Langereis blood group)provided by Xenbase
Primary source: Xenbase:XB-GENE-1001119
See related: Ensembl:ENSXETG00000013892
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (83138752..83154135, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (77841741..77861436, complement)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ABC-type heme transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables ABC-type heme transporter activity	IEA Inferred from Electronic Annotation more info
enables ABC-type transporter activity	IEA Inferred from Electronic Annotation more info
enables ABC-type transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP binding	ISS Inferred from Sequence or Structural Similarity more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	ISS Inferred from Sequence or Structural Similarity more info
enables heme binding	IBA Inferred from Biological aspect of Ancestor more info
enables tetrapyrrole binding	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular detoxification of cadmium ion	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within heme metabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within heme transmembrane transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in heme transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within intracellular copper ion homeostasis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within melanosome assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within porphyrin-containing compound metabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within tetrapyrrole metabolic process	ISS Inferred from Sequence or Structural Similarity more info
involved_in transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	ISS Inferred from Sequence or Structural Similarity more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in early endosome membrane	IEA Inferred from Electronic Annotation more info
located_in early endosome membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in endolysosome membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in endosome	IEA Inferred from Electronic Annotation more info
located_in extracellular exosome	ISS Inferred from Sequence or Structural Similarity more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in late endosome membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in lysosomal membrane	IEA Inferred from Electronic Annotation more info
located_in lysosomal membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in lysosome	IEA Inferred from Electronic Annotation more info
located_in melanosome membrane	IEA Inferred from Electronic Annotation more info
located_in melanosome membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info
located_in multivesicular body membrane	IEA Inferred from Electronic Annotation more info
located_in multivesicular body membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info
is_active_in vacuolar membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: ATP-binding cassette sub-family B member 6

Names: ABC-type heme transporter ABCB6; ATP-binding cassette sub-family B member 6, mitochondrial; ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)

NP_001072643.1

EC 7.6.2.5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001079175.1 → NP_001072643.1 ATP-binding cassette sub-family B member 6

See identical proteins and their annotated locations for NP_001072643.1

Status: PROVISIONAL

Source sequence(s)

BC123925

UniProtKB/Swiss-Prot

Q08D64

UniProtKB/TrEMBL

A0A6I8QU83

Related

ENSXETP00000030397.4, ENSXETT00000030397.4

Conserved Domains (2) summary

COG5265
Location:320 → 815

ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

pfam16185
Location:6 → 246

MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region