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oxsm 3-oxoacyl-ACP synthase, mitochondrial [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779998, updated on 4-Nov-2024

Summary

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Official Symbol
oxsmprovided by Xenbase
Official Full Name
3-oxoacyl-ACP synthase, mitochondrialprovided by Xenbase
Primary source
Xenbase:XB-GENE-949586
See related
Ensembl:ENSXETG00000019896 AllianceGenome:Xenbase:XB-GENE-949586
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable 3-oxoacyl-[acyl-carrier-protein] synthase activity. Predicted to act upstream of or within fatty acid biosynthetic process. Orthologous to human OXSM (3-oxoacyl-ACP synthase, mitochondrial). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See oxsm in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (47698122..47712648)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (76453158..76466215, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II beta Neighboring gene N-glycanase 1 Neighboring gene leucine rich repeat containing 3B Neighboring gene NIMA-related kinase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC147244

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monocarboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
NP_001072543.1
XP_012820367.2
XP_012820368.2
XP_017950190.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079075.1 → NP_001072543.1  3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

    See identical proteins and their annotated locations for NP_001072543.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122044
    UniProtKB/TrEMBL
    F6YEY6, Q0P4J7
    Related
    ENSXETP00000043030.3, ENSXETT00000043030.4
    Conserved Domains (1) summary
    TIGR03150
    Location:40 → 456
    fabF; beta-ketoacyl-acyl-carrier-protein synthase II

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    47698122..47712648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964913.3 → XP_012820367.2  3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A803KIW8
    Related
    ENSXETP00000112694.1, ENSXETT00000115735.1
    Conserved Domains (1) summary
    TIGR03150
    Location:40 → 456
    fabF; beta-ketoacyl-acyl-carrier-protein synthase II

  2. XM_012964914.3 → XP_012820368.2  3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A803KIW8
    Related
    ENSXETP00000109360.1, ENSXETT00000118827.1
    Conserved Domains (1) summary
    TIGR03150
    Location:40 → 456
    fabF; beta-ketoacyl-acyl-carrier-protein synthase II

  3. XM_018094701.2 → XP_017950190.2  3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A803KIW8
    Related
    ENSXETP00000106939.1, ENSXETT00000114132.1
    Conserved Domains (1) summary
    TIGR03150
    Location:40 → 456
    fabF; beta-ketoacyl-acyl-carrier-protein synthase II
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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