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ehd3 EH domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779678, updated on 17-Aug-2024

Summary

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Official Symbol
ehd3provided by Xenbase
Official Full Name
EH domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-961795
See related
Ensembl:ENSXETG00000022070
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ehd3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (7393970..7433356)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (3613422..3651212)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 14 Neighboring gene calpain 14 Neighboring gene carbohydrate sulfotransferase 10-like Neighboring gene titin homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC146452

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
EH domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078763.1 → NP_001072231.1  EH domain-containing protein 3

    See identical proteins and their annotated locations for NP_001072231.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118817
    UniProtKB/TrEMBL
    A0A803KDI9, F6Q7A9, Q0VFI4
    Related
    ENSXETP00000047764.4, ENSXETT00000047764.4
    Conserved Domains (4) summary
    smart00027
    Location:379 → 450
    EH; Eps15 homology domain
    cd09913
    Location:60 → 241
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:24 → 56
    EHD_N; N-terminal EH-domain containing protein
    pfam18150
    Location:229 → 335
    DUF5600; Domain of unknown function (DUF5600)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    7393970..7433356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901777.1 → XP_031757637.1  EH domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A803KDI9, A0A8J1JIE6
    Related
    ENSXETP00000118310.1, ENSXETT00000115109.1
    Conserved Domains (4) summary
    smart00027
    Location:454 → 525
    EH; Eps15 homology domain
    cd09913
    Location:60 → 316
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:24 → 56
    EHD_N; N-terminal EH-domain containing protein
    pfam18150
    Location:304 → 410
    DUF5600; Domain of unknown function (DUF5600)

  2. XM_031901776.1 → XP_031757636.1  EH domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q9Z3, A0A803KDI9
    Related
    ENSXETP00000069524.1, ENSXETT00000081180.2
    Conserved Domains (4) summary
    smart00027
    Location:454 → 547
    EH; Eps15 homology domain
    cd09913
    Location:60 → 316
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:24 → 56
    EHD_N; N-terminal EH-domain containing protein
    pfam18150
    Location:304 → 410
    DUF5600; Domain of unknown function (DUF5600)

  3. XM_012963134.3 → XP_012818588.1  EH domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QN53, A0A6I8R2F3, A0A803KDI9, A0A803KK98
    Related
    ENSXETP00000075469.2, ENSXETT00000086357.2
    Conserved Domains (4) summary
    smart00027
    Location:438 → 531
    EH; Eps15 homology domain
    cd09913
    Location:60 → 300
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:24 → 56
    EHD_N; N-terminal EH-domain containing protein
    pfam18150
    Location:288 → 394
    DUF5600; Domain of unknown function (DUF5600)
Nucleotide Protein Strain
Heading Accession and Version

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