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tbl1xr1.S transducin (beta)-like 1 X-linked receptor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779369, updated on 17-Aug-2024

Summary

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Official Symbol
tbl1xr1.S
Official Full Name
transducin (beta)-like 1 X-linked receptor 1 S homeolog
Primary source
Xenbase:XB-GENE-864821
Locus tag
XELAEV_18029696mg
See related
EnsemblRapid:ENSXLAG00005007770
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
TBLR1; tbl1xr1-a; tbl1xr1-b
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Genomic context

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Location:
chromosome: 5S
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (96158058..96240177)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (90357602..90437610)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene zinc finger matrin-type 3 S homeolog Neighboring gene potassium channel subfamily M regulatory beta subunit 2 S homeolog Neighboring gene uncharacterized LOC121394119 Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene neuroligin 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80502

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
F-box-like/WD repeat-containing protein TBL1XR1-B
Names
TBL1-related protein 1-B
nuclear receptor corepressor/HDAC3 complex subunit TBLR1-B
transducin beta-like 1X-related homolog 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096987.1 → NP_001090456.1  F-box-like/WD repeat-containing protein TBL1XR1-B

    See identical proteins and their annotated locations for NP_001090456.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073215
    UniProtKB/Swiss-Prot
    Q6GPC6
    UniProtKB/TrEMBL
    A0A1L8G3Y4, A0A974CRZ3, B1H1U0
    Related
    ENSXLAP00005022219.1, ENSXLAT00005022911.1
    Conserved Domains (3) summary
    cd00200
    Location:172 → 478
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:180 → 223
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    96158058..96240177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264626.2 → XP_018120115.1  F-box-like/WD repeat-containing protein TBL1XR1-B isoform X1

    UniProtKB/Swiss-Prot
    Q6GPC6
    UniProtKB/TrEMBL
    A0A1L8G3Y4, A0A974CRZ3, B1H1U0
    Conserved Domains (3) summary
    cd00200
    Location:172 → 478
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:180 → 223
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH

  2. XM_041564075.1 → XP_041420009.1  F-box-like/WD repeat-containing protein TBL1XR1-B isoform X1

    UniProtKB/Swiss-Prot
    Q6GPC6
    UniProtKB/TrEMBL
    A0A1L8G3Y4, A0A974CRZ3, B1H1U0
    Conserved Domains (3) summary
    cd00200
    Location:172 → 478
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:180 → 223
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GPC6.1 GenPept UniProtKB/Swiss-Prot:Q6GPC6

Gene LinkOut

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